I will find you. And I will kill you.
After some problems I have been seeing long term and a little combined research/cogitation, I decided to replace the alternator. Decided upon a NB2 rebuilt unit with 80 amp output (vice the 70 amp of the '00 stocker). Installed that today, while I was underneath I creeped the length of the car while she was running to look for any leaks or out of the ordinary stuff. Nothing presented thankfully. After that was done I went for a drive and did some datalogging. My voltage stayed constant throughout which was good, however I had two alarm lights under different circumstances. After that I sent a message to the Megasquirt builder to pick his brain about what I'm seeing.